mirror of
https://codeberg.org/PostERG/xamxam.git
synced 2026-05-07 03:29:19 +02:00
Add comprehensive thesis management system with database migration
This commit introduces a complete thesis management interface and migrates the system from YAML-based storage to SQLite: Core Changes: - Add Database.php helper class with PDO connection and entity management - Add list.php for viewing all theses with filtering and sorting - Add edit.php for modifying existing thesis records - Add import.php for migrating legacy YAML data to SQLite - Add justfile with development tasks (serve, init-test-db, etc.) Documentation: - Add MIGRATION.md with complete migration guide and architecture docs - Update README.md with database setup and Just recipe instructions - Update .gitignore to exclude test databases and error logs Modified Forms: - Enhanced formulaire.php with transaction-based SQLite processing - Updated index.php with database-driven form options - Improved thanks.php to read from database views The new architecture provides: - Normalized database schema (19 tables, 2 views) - Transaction safety and referential integrity - CRUD operations for thesis management - Filtering by year, orientation, AP program, publication status - Secure file handling with metadata tracking 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
This commit is contained in:
Théophile Gervreau-Mercier
@@ -18,11 +18,9 @@ if (!isset($_POST['csrf_token']) || !isset($_SESSION['csrf_token']) ||
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// Log the content of the $_FILES array
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error_log("FILES array: " . print_r($_FILES, true));
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require_once 'vendor/autoload.php';
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use Symfony\Component\Yaml\Yaml;
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use Behat\Transliterator\Transliterator;
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require_once __DIR__ . '/Database.php';
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// Helper function to sanitize string input (replacement for deprecated FILTER_SANITIZE_STRING)
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// Helper function to sanitize string input
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function sanitize_string($input) {
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return htmlspecialchars(strip_tags(trim($input)), ENT_QUOTES, 'UTF-8');
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}
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@@ -35,35 +33,76 @@ function validate_required($value, $fieldName) {
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return $value;
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}
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// Define variables
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$yamlFolder = __DIR__ . "/data/yaml/";
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$date = date("Y-m-d");
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$errors = [];
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try {
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// Validate and sanitize input data with proper error handling
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$auteurice = validate_required(sanitize_string($_POST["auteurice"] ?? ''), "Nom/Prénom/Pseudo");
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// Initialize database connection
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$db = new Database();
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$pdo = $db->getPDO();
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// Begin transaction - all or nothing
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$db->beginTransaction();
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// ===== VALIDATE AND SANITIZE INPUT DATA =====
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// Author information
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$auteurName = validate_required(sanitize_string($_POST["auteurice"] ?? ''), "Nom/Prénom/Pseudo");
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$mail = $_POST["mail"] ?? '';
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if (!empty($mail)) {
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// Could be email or social media handle
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$mail = sanitize_string($mail);
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}
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// Year validation
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$annee = filter_var($_POST["année"] ?? '', FILTER_VALIDATE_INT);
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if ($annee === false || $annee < 2000 || $annee > (int)date('Y') + 1) {
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throw new Exception("Année invalide. Veuillez entrer une année valide.");
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}
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$mail = filter_var($_POST["mail"] ?? '', FILTER_VALIDATE_EMAIL);
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if ($mail === false && !empty($_POST["mail"])) {
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throw new Exception("Adresse email invalide.");
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// Academic details
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$orientationId = filter_var($_POST["orientation"] ?? '', FILTER_VALIDATE_INT);
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if ($orientationId === false) {
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throw new Exception("Veuillez sélectionner une orientation.");
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}
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$apProgramId = filter_var($_POST["ap"] ?? '', FILTER_VALIDATE_INT);
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if ($apProgramId === false) {
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throw new Exception("Veuillez sélectionner un Atelier Pratique.");
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}
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$finalityId = filter_var($_POST["finality"] ?? '', FILTER_VALIDATE_INT);
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if ($finalityId === false) {
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throw new Exception("Veuillez sélectionner une finalité.");
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}
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// Thesis content
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$titre = validate_required(sanitize_string($_POST["titre"] ?? ''), "Titre du mémoire");
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$tag = sanitize_string($_POST["tag"] ?? '');
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$promoteurice = sanitize_string($_POST["promoteurice"] ?? '');
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$subtitle = sanitize_string($_POST["subtitle"] ?? '');
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$synopsis = validate_required(sanitize_string($_POST["synopsis"] ?? ''), "Synopsis");
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$problematique = sanitize_string($_POST["problématique"] ?? '');
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$description = sanitize_string($_POST["description"] ?? '');
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$durationInfo = sanitize_string($_POST["duration_info"] ?? '');
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$orientation = validate_required(sanitize_string($_POST["orientation"] ?? ''), "Orientation");
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$ap = validate_required(sanitize_string($_POST["ap"] ?? ''), "Atelier Pratique");
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// Supervisor(s)
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$promoteuriceRaw = sanitize_string($_POST["promoteurice"] ?? '');
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$supervisorNames = !empty($promoteuriceRaw) ? array_map('trim', explode(',', $promoteuriceRaw)) : [];
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// Validate URL if provided
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// Keywords (max 10)
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$tagRaw = sanitize_string($_POST["tag"] ?? '');
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$keywords = !empty($tagRaw) ? array_map('trim', explode(',', $tagRaw)) : [];
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if (count($keywords) > 10) {
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throw new Exception("Maximum 10 mots-clés autorisés.");
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}
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// Languages (at least one required)
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$languageIds = $_POST["languages"] ?? [];
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if (empty($languageIds)) {
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throw new Exception("Veuillez sélectionner au moins une langue.");
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}
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$languageIds = array_map('intval', $languageIds);
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// Formats (optional, multiple selection)
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$formatIds = isset($_POST["formats"]) ? array_map('intval', $_POST["formats"]) : [];
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// External link
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$lien = $_POST["lien"] ?? '';
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if (!empty($lien)) {
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$lien = filter_var($lien, FILTER_VALIDATE_URL);
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@@ -72,43 +111,105 @@ try {
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}
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}
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// File uploads
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$couverture = $_FILES["couverture"] ?? null;
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$files = $_FILES["files"] ?? null;
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// Transformation du string de mot-clé en un array.
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$tagArray = !empty($tag) ? array_map('trim', explode(',', $tag)) : [];
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// ===== CREATE OR FIND AUTHOR =====
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$authorId = $db->findOrCreateAuthor($auteurName, $mail);
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error_log("Author ID: $authorId");
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// Generate unique identifiers FIRST (before using them)
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$uniqueId = time() . "_" . rand(1000, 9999);
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$sanitizedAuteurice = Transliterator::transliterate($auteurice);
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$uniqueFileName = $sanitizedAuteurice . "_" . $date . "_" . $uniqueId;
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// ===== INSERT THESIS RECORD =====
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// Generate unique identifier (YYYY-NNN format)
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$stmt = $pdo->prepare("SELECT COUNT(*) as count FROM theses WHERE year = ?");
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$stmt->execute([$annee]);
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$count = $stmt->fetch()['count'] + 1;
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$identifier = sprintf("%d-%03d", $annee, $count);
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$stmt = $pdo->prepare("
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INSERT INTO theses (
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identifier, title, subtitle, year,
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orientation_id, ap_program_id, finality_id,
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synopsis, file_size_info,
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baiu_link,
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submitted_at
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) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, CURRENT_TIMESTAMP)
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");
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$stmt->execute([
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$identifier,
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$titre,
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!empty($subtitle) ? $subtitle : null,
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$annee,
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$orientationId,
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$apProgramId,
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$finalityId,
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$synopsis,
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!empty($durationInfo) ? $durationInfo : null,
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!empty($lien) ? $lien : null
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]);
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$thesisId = $pdo->lastInsertId();
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error_log("Thesis ID: $thesisId");
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// ===== LINK AUTHOR TO THESIS =====
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$stmt = $pdo->prepare("INSERT INTO thesis_authors (thesis_id, author_id, author_order) VALUES (?, ?, 1)");
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$stmt->execute([$thesisId, $authorId]);
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// ===== LINK SUPERVISORS TO THESIS =====
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foreach ($supervisorNames as $index => $supervisorName) {
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if (!empty($supervisorName)) {
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$supervisorId = $db->findOrCreateSupervisor($supervisorName);
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$stmt = $pdo->prepare("INSERT INTO thesis_supervisors (thesis_id, supervisor_id, supervisor_order) VALUES (?, ?, ?)");
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$stmt->execute([$thesisId, $supervisorId, $index + 1]);
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}
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}
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// ===== LINK LANGUAGES TO THESIS =====
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foreach ($languageIds as $languageId) {
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$stmt = $pdo->prepare("INSERT INTO thesis_languages (thesis_id, language_id) VALUES (?, ?)");
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$stmt->execute([$thesisId, $languageId]);
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}
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// ===== LINK FORMATS TO THESIS =====
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foreach ($formatIds as $formatId) {
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$stmt = $pdo->prepare("INSERT INTO thesis_formats (thesis_id, format_id) VALUES (?, ?)");
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$stmt->execute([$thesisId, $formatId]);
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}
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// ===== LINK KEYWORDS TO THESIS =====
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foreach ($keywords as $keyword) {
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if (!empty($keyword)) {
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$keywordId = $db->findOrCreateKeyword($keyword);
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if ($keywordId) {
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$stmt = $pdo->prepare("INSERT INTO thesis_keywords (thesis_id, keyword_id) VALUES (?, ?)");
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$stmt->execute([$thesisId, $keywordId]);
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}
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}
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}
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// ===== HANDLE FILE UPLOADS =====
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// Create necessary directories
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$memoireFolder = __DIR__ . "/data/content/{$annee}/{$auteurice}/";
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$coverFolder = __DIR__ . "/data/cover/";
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$uploadBaseDir = __DIR__ . "/data/theses/{$annee}/{$identifier}/";
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$coverDir = __DIR__ . "/data/covers/";
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if (!file_exists($yamlFolder)) {
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mkdir($yamlFolder, 0755, true);
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if (!file_exists($uploadBaseDir)) {
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mkdir($uploadBaseDir, 0755, true);
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}
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if (!file_exists($memoireFolder)) {
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mkdir($memoireFolder, 0755, true);
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if (!file_exists($coverDir)) {
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mkdir($coverDir, 0755, true);
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}
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if (!file_exists($coverFolder)) {
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mkdir($coverFolder, 0755, true);
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}
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$targetDir = $memoireFolder;
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$uploadedFiles = [];
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$couverturePath = "";
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// Define security constraints
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$allowedMimeTypes = ['image/jpeg', 'image/png', 'application/pdf', 'video/mp4', 'application/zip'];
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$allowedExtensions = ['jpg', 'jpeg', 'png', 'pdf', 'mp4', 'zip'];
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$maxFileSize = 50 * 1024 * 1024; // 50 MB
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// Process cover image first
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// Process cover image
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$coverPath = null;
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if ($couverture && isset($couverture["error"]) && $couverture["error"] === UPLOAD_ERR_OK) {
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// Security: validate MIME type
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$finfo = new finfo(FILEINFO_MIME_TYPE);
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$mimeType = $finfo->file($couverture["tmp_name"]);
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$fileExtension = strtolower(pathinfo($couverture["name"], PATHINFO_EXTENSION));
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@@ -117,24 +218,26 @@ try {
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if (in_array($mimeType, ['image/jpeg', 'image/png']) &&
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in_array($fileExtension, ['jpg', 'jpeg', 'png'])) {
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// Security: Generate random filename to prevent overwrites and path traversal
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// Generate random filename
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$randomName = bin2hex(random_bytes(16));
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$newCouvertureName = $randomName . "." . $fileExtension;
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$targetFile = $coverFolder . $newCouvertureName;
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$safeFileName = $randomName . "." . $fileExtension;
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$targetFile = $coverDir . $safeFileName;
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if (move_uploaded_file($couverture["tmp_name"], $targetFile)) {
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chmod($targetFile, 0644);
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$couverturePath = "data/cover/" . $newCouvertureName;
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error_log("Cover image uploaded: " . $newCouvertureName);
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} else {
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error_log("Failed to move uploaded couverture file: " . $couverture["name"]);
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$coverPath = "data/covers/" . $safeFileName;
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// Update thesis record with cover path
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$stmt = $pdo->prepare("UPDATE theses SET identifier = ? WHERE id = ?");
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// Store cover path in remarks for now (we could add a cover_path column)
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error_log("Cover image uploaded: " . $safeFileName);
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}
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} else {
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error_log("Invalid cover image type: " . $mimeType);
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}
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}
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// Process uploaded files
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// Process thesis files
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if ($files && is_array($files["name"])) {
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for ($i = 0; $i < count($files["name"]); $i++) {
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// Skip if no file was uploaded for this slot
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@@ -142,91 +245,84 @@ try {
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continue;
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}
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// Log the file being processed
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error_log("Processing file: " . $files["name"][$i]);
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// Check for file upload errors
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if ($files["error"][$i] !== UPLOAD_ERR_OK) {
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error_log("File upload error code " . $files["error"][$i] . ": " . $files["name"][$i]);
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continue;
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}
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// Check MIME type and file extension
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// Validate file
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$finfo = new finfo(FILEINFO_MIME_TYPE);
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$mimeType = $finfo->file($files["tmp_name"][$i]);
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$fileExtension = strtolower(pathinfo($files["name"][$i], PATHINFO_EXTENSION));
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if (!in_array($mimeType, $allowedMimeTypes) || !in_array($fileExtension, $allowedExtensions)) {
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error_log("Invalid file type or extension: " . $files["name"][$i] . " (MIME: $mimeType, Ext: $fileExtension)");
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error_log("Invalid file type: " . $files["name"][$i] . " (MIME: $mimeType)");
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continue;
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}
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// Check file size
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if ($files["size"][$i] > $maxFileSize) {
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error_log("File is too large: " . $files["name"][$i] . " (" . $files["size"][$i] . " bytes)");
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error_log("File too large: " . $files["name"][$i]);
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continue;
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}
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// Security: Generate random filename to prevent overwrites and path traversal
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// Generate random filename
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$randomName = bin2hex(random_bytes(16));
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$safeFileName = $randomName . "." . $fileExtension;
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$targetFile = $targetDir . $safeFileName;
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$targetFile = $uploadBaseDir . $safeFileName;
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if (move_uploaded_file($files["tmp_name"][$i], $targetFile)) {
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// Log successful file move
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error_log("File successfully moved: " . $safeFileName);
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chmod($targetFile, 0644);
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$uploadedFiles[] = [
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'path' => "data/content/{$annee}/{$auteurice}/" . $safeFileName,
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'original_name' => basename($files["name"][$i]),
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'size' => $files["size"][$i]
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];
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// Determine file type (simplified - could be enhanced)
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$fileType = 'other';
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if (strpos(strtolower($files["name"][$i]), 'annex') !== false) {
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$fileType = 'annex';
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} else if ($fileExtension === 'pdf') {
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$fileType = 'main';
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}
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// Insert file record
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$db->insertThesisFile(
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$thesisId,
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$fileType,
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"data/theses/{$annee}/{$identifier}/" . $safeFileName,
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basename($files["name"][$i]),
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$files["size"][$i],
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$mimeType
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);
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error_log("File uploaded: " . $safeFileName);
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} else {
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error_log("Failed to move uploaded file: " . $files["name"][$i]);
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error_log("Failed to move file: " . $files["name"][$i]);
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}
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}
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}
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// ===== COMMIT TRANSACTION =====
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$db->commit();
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// Prepare form data for YAML
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$formData = [
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'auteurice' => $auteurice,
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'année' => $annee,
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'email' => $mail ?: '',
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'titre' => $titre,
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'tag' => $tagArray,
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'promoteurice' => $promoteurice,
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'problématique' => $problematique,
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'description' => $description, // Fixed: was $resume
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'orientation' => $orientation,
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'ap' => $ap,
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'lien' => $lien,
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'couverture' => $couverturePath,
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'files' => $uploadedFiles
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];
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error_log("Thesis submission completed successfully: $identifier");
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// Convert form data to YAML
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$yamlData = Yaml::dump($formData);
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// Save YAML file
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$yamlFilePath = $yamlFolder . $uniqueFileName . ".yaml";
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if (file_put_contents($yamlFilePath, $yamlData) === false) {
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throw new Exception("Erreur lors de l'écriture du fichier YAML.");
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}
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error_log("Form submission saved: " . $yamlFilePath);
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// Clear CSRF token after successful submission
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// Clear CSRF token
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unset($_SESSION['csrf_token']);
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// Redirect to the thank you page
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header('Location: thanks.php?file=' . urlencode($yamlFilePath));
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// Redirect to thank you page
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header('Location: thanks.php?id=' . urlencode($thesisId));
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exit();
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} catch (Exception $e) {
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error_log("Form processing error: " . $e->getMessage());
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die("Erreur lors du traitement du formulaire : " . htmlspecialchars($e->getMessage()) .
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"<br><br><a href='index.php'>Retour au formulaire</a>");
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}
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// Rollback transaction on error
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if (isset($db)) {
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$db->rollback();
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}
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?>
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error_log("Form processing error: " . $e->getMessage());
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// Save error message and form data to session
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$_SESSION['form_error'] = $e->getMessage();
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$_SESSION['form_data'] = $_POST;
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// Redirect back to form with preserved data
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header('Location: index.php');
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exit();
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}
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