1. note_intention: Delete old file only when a genuinely new upload arrives
(32-char hex file_id), not when the FilePond pool preserves an existing
file by sending its DB integer ID. Previously the DB integer ID
triggered $hasNewNote=true, which deleted the existing note_intention
from disk+DB, then handleFilePondSingleFile couldn't re-process it
because the regex requires a hex pattern. Same fix applied to cover.
2. All file deletions now use deleteThesisFileToTrash() which renames
files to tmp/_trash/ instead of unlinking. The trash preserves
original filenames prefixed with DB id for traceability. Skips
website URLs and PeerTube refs (no disk file).
3. Storage prefix changed from theses/ to documents/ to reflect that
the folder holds all document types (determined by file_type in DB).
MediaController visibility gate supports both prefixes for backward
compat with existing files.
4. File browser + relink feature for orphaned files:
- /admin/fragments/file-browser.php — HTMX tree browser for
storage/documents/ and storage/theses/
- /admin/actions/filepond/relink.php — POST endpoint that inserts
a thesis_files row pointing to existing on-disk file
- Per-pool "📂 Relier" buttons (edit mode only)
- JS: XamxamOpenFileBrowser / XamxamRelinkFile with FilePond integration
- CSS: .relink-modal dialog + .file-browser tree styles
- ErrorHandler tests: 77 assertions covering FK extraction, normalization, dedup, edge cases. Fix FK table map for child tables.
- Fix FK violation: (int)null → 0 in createThesis for orientation/ap/finality/license FK columns. Add FK value logging to updateThesis.
- Add CURRENT_ISSUES.md with summary of FK violation, dev debugging, and tag dedup status for next conversation
- Add DuplicateThesisException (typed, carries existing thesis metadata)
- Add Database::findDuplicateThesis(): matches on year + author + normalised
title (exact, prefix, Levenshtein ≤10% of longer string)
- ThesisCreateController::submit() runs duplicate check before any DB write
and throws DuplicateThesisException on match
- AppLogger::logDuplicate() writes status=duplicate entries to the JSON-lines
log for audit purposes
- App::flash/consumeFlash extended to support 'warning' flash type
- admin/actions/formulaire.php: catches DuplicateThesisException, logs it,
flashes an HTML warning toast with a clickable link to the existing thesis,
and repopulates the form fields
- partage/index.php: same catch block; surfaces a plain-text flash-warning
banner on the student form with identifier, title, and year of the match;
form is repopulated via session
- toast.php: renders toast--warning variant
- admin.css: .toast--warning + link colour rules
- form.css: .flash-warning style for the partage form
- Removed the `vimeo/psalm` dependency and all related files
(`psalm.xml`, `psalm‑baseline.xml`, suppress annotations).
- Added **PHPStan** (v2.1.54) and **PHP‑CS‑Fixer** (v3.95.1) to
`vendor/bin/`.
- Created `phpstan.neon` (level 5, bootstraps `app/bootstrap.php`,
scans `Parsedown.php`).
- Created `phpstan‑baseline.neon` with 10 pre‑existing errors.
- Added `.php‑cs‑fixer.dist.php` (PSR‑12 + PHP80Migration, targets
`app/src` & `app/tests`).
- Added `biome.json` and updated `justfile` to replace the old Psalm
recipes with `phpstan`, `cs‑check`, and `cs‑fix`.
- Updated `.gitignore` to exclude PHPStan and PHP‑CS‑Fixer cache files.
- Updated several JS files (`file‑preview.js`, `file‑upload‑queue.js`)
eand PHP controllers (`MediaController.php`, `SearchController.php`,
`SystemController.php`).
- Minor adjustments to `TODO.md`, `app/src/Database.php`,
`app/src/Parsedown.php`, `app/src/ShareLink.php`, and
`app/src/SmtpRelay.php`.
