Full analysis of PHP and SQLite layer covering:
Performance:
- WAL mode + cache_size pragma missing from Database constructor
- Separate is_published/year indexes force temp B-tree sort on every public query
- v_theses_full materialised as CTE on every query, indexes never used by view
- getAllPublishedTheses() runs full 15-join view just for the author name index
PHP / Database.php:
- 5 dead CRUD helpers (getOrientationId etc.) never called anywhere
- 13 alias methods doubling every lookup; pick canonical names and remove
- getPDO()/getConnection() leaking to 8 call-sites with raw SQL that belongs in DB layer
- Unparameterised query in edit.php line 155 (SQL injection, fix immediately)
- sanitize_string() HTML-escapes at write time — stores & in DB, breaks search/export
- Dead variable $problematique in formulaire.php (read from POST, never used)
- setThesisJury() has no transaction guard of its own
- DB config auto-detection silently uses test.db if file exists locally
Maintainability:
- edit.php (530 lines) mixes display + POST + file upload — extract action file
- Banner upload logic copy-pasted between formulaire.php and edit.php
- Junction-table loops open-coded in every action; add setThesisLanguages/Formats/Tags
- RateLimit writes a JSON file on every public request
- __wakeup() throws from public method (PHP 8 deprecation)
SecurityTest::Test1 was calling $db->searchTheses($string) with a plain
string, but searchTheses() was refactored to require array $params when
the tag M2M work landed. This caused an immediate PHP fatal TypeError
before any SQL ever ran, killing the entire Security test suite with
exit code 255 and masking all three tests.
Fix: pass each malicious payload via ['query' => $string] which is the
correct API and properly exercises the parameterised query path through
validateSearchParams() + buildSearchConditions(). Added a clarifying
comment explaining why the array form is required.
All 4 test suites now pass:
- Database (Unit): 7/7
- Rate Limit (Unit): 5/5
- Search (Integration): 6/6
- Security: 3/3
Add a 'nginx — config' tab to the Système admin page (system.php).
- Reads /etc/nginx/sites-available/posterg (live deployed config) first;
falls back to nginx/posterg.conf (local reference copy) when the live
path is inaccessible (e.g. in dev, or wrong permissions).
- Displays a colour-coded badge: green '● Config déployée' for live,
amber '⚠ Référence locale' for the fallback.
- Renders the full config in the shared .log-output code block with
line numbers (data-n gutter via CSS ::before) and lightweight nginx
syntax colouring (comments grey, block keywords purple, directives blue).
- Reuses the existing copy-to-clipboard button.
- Tab routing: activeTab validation extended to accept 'nginx_config';
log pre-loading guards skip when activeTab is 'nginx_config'.
- No remote execution: read-only, zero new attack surface.
Replace the separate /admin/status.php and /admin/logs.php pages with a
single /admin/system.php page organised around a tab bar.
- system.php — top-level tab bar: 'Statut' + one tab per log file
(nginx accès, nginx erreurs, PHP-FPM). Switching tabs is a plain
href (?tab=…) so no JS required for navigation; the lines-selector
SELECT triggers a location change on 'change' for instant reload
without a submit button.
- Status tab preserves all existing service cards, PHP runtime grid,
and disk-usage bar from the old status.php.
- Log tabs preserve line-count selector, file metadata bar, and
per-line colour coding from the old logs.php.
- New: copy-to-clipboard button on each log output block (Clipboard
API with textarea execCommand fallback).
- status.php / logs.php replaced with 301 redirect stubs so existing
bookmarks and links keep working.
- templates/admin/head.php: 'Statut' + 'Journaux' nav items replaced
with a single 'Système' item; active state covers all three page
names for redirect compatibility.
Implements the admin user management UI as a self-contained PHP password
change/set flow — no SSH or sudo required.
- public/admin/account.php: shows auth status (PHP hash present, credentials
file path), password change form (requires current password when one exists,
min 12 chars, confirm field), and a danger-zone form to delete the
credentials file entirely
- public/admin/actions/account.php: CSRF-guarded POST handler; verifies
current password via AdminAuth::login() before accepting a new one;
generates bcrypt (cost 12) hash; writes config/admin_credentials.php
atomically via a temp file + rename; regenerates session on success;
redirects to /admin/login.php when credentials are deleted
- templates/admin/head.php: 'Compte' nav link added (active on account.php)
- public/assets/admin.css: .admin-account-status, .admin-section-title,
.admin-field-hint, .admin-danger-zone component styles added
Note: the nginx htpasswd flow (manage-admin-users.sh) requires root on the
server and is intentionally kept as a CLI-only operation.
- public/admin/logs.php: new page tailing nginx error/access + PHP-FPM logs.
Selector for log file and line count (50/100/200/500, default 100).
Lines reversed (newest first), colour-coded by severity, numbered gutter.
Graceful degradation when exec() unavailable or file unreadable (dev msg).
- templates/admin/head.php: 'Journaux' nav link added after 'Statut'.
- public/admin/status.php: remove curl_close() call deprecated in PHP 8.5
(no-op since PHP 8.0); replace with unset($ch) to silence the warning
that was leaking raw text above the page output.
New page /admin/status.php gives a real-time health dashboard:
- Services panel: nginx (systemctl), php-fpm (auto-detects versioned unit names),
site HTTP ping (curl HEAD with latency), SQLite DB (exists/writable/row count/size),
storage directory (writable, banner/cover file counts), maintenance-mode flag.
- PHP runtime panel: version, SAPI, memory_limit, upload_max_filesize, post_max_size,
max_execution_time.
- Disk usage bar for the partition containing APP_ROOT (colour-coded: green/amber/red).
- All shell calls go through safeExec() which suppresses stderr and checks exit code;
systemctl/curl unavailability degrades gracefully to 'unknown' without fatal errors.
- 'Statut' nav link added to templates/admin/head.php (active state on status.php).
- tests/Unit/DatabaseTest.php: tests 5-7 for findOrCreateTag round-trip, getUsedTags column, alias
- tests/Integration/SearchTest.php: tests 4-6 for tag subquery, full-text query, count consistency
- Database: getAllPublishedTheses() bypasses 100-row search cap for student index
- search.php: uses getAllPublishedTheses() for étudiantes column; all tests pass
- Flat purple-gradient nav bar with POSTERG/RÉPERTOIRE/À PROPOS links
- Full-width search bar with icon, bottom-border only, below nav
- Home: white bg, media card grid (thumbnail + author/title label below)
- Répertoire: 4-column index (Années/Catégories/Étudiantes/Mots-clés)
- TFE: 2-column layout (large text left, media right)
- À Propos: 2-column, large monospace text, new apropos.php page
- Admin: dark theme (#1a1a1a), purple gradient nav, bottom-border inputs
- New shared partials: templates/nav.php, templates/search-bar.php
- Rewrote all CSS: common, main, search, tfe, apropos, admin
- Database: extract private buildSearchConditions(array $params): array shared by
searchTheses() and countSearchResults(), eliminating ~80 lines of duplication;
add array type hints to both public methods
- Database: add getThesesList(array $filters) and getAllYears() so admin/index.php
no longer builds raw SQL inline
- admin/index.php: replace inline PDO query block with $db->getThesesList() /
$db->getAllYears(); drop the now-unused $pdo local
- config/bootstrap.php: remove dead include_template() helper and the
vendor/autoload.php Composer stub (no vendor/ directory exists)
- apps/: delete entire directory (leftover artefact, no code references it)
- tests/Integration/SearchTest.php: fix three searchTheses() calls from bare
strings to proper array params to match the method signature (prevented TypeError)
